chart is kinda working
This commit is contained in:
JuliusHerrmann
parent
5016e00fb6
commit
07836f3704
64
package-lock.json
generated
64
package-lock.json
generated
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@ -18890,6 +18922,7 @@
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@ -22135,6 +22174,7 @@
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@ -29875,6 +29930,15 @@
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@ -6,9 +6,11 @@
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"@testing-library/jest-dom": "^5.11.4",
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"@testing-library/react": "^11.1.0",
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"@testing-library/user-event": "^12.1.10",
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"d3": "^3.5.17",
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"react": "^17.0.2",
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"react-cytoscapejs": "^1.2.1",
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"react-dom": "^17.0.2",
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"react-nvd3": "^0.5.7",
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"react-scripts": "4.0.3",
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"web-vitals": "^1.0.1"
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},
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@ -8,8 +8,8 @@ import HorizonSelector from './HorizonSelector.jsx';
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import ContactSelector from './ContactSelector.jsx';
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import KarateClass from './exampleNetworks/Karate.jsx';
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import ModelSelector from './ModelSelector.jsx';
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import GraphCytoscape from './GraphCytoscape.jsx';
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import SIModel from './exampleModels/SIModel.jsx';
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import Visual from './Visual.jsx';
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class Simulation extends React.Component{
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constructor(props){
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@ -90,7 +90,7 @@ class Simulation extends React.Component{
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<ModelSelector handleChange={this.modelChanged}/>
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</div>
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<div id="SimulationGraph">
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<GraphCytoscape recalculateFuntion={this.recalculate}
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<Visual recalculateFuntion={this.recalculate}
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graphData={this.state.graphData} simulationData={this.state.simulationData} colors={this.state.selectedModel.getColors()} normalize={this.state.selectedModel.normalizeDistribution}/>
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</div>
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</div>
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@ -1,9 +1,13 @@
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import React from 'react';
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import CytoscapeComponent from 'react-cytoscapejs';
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import '../css/Graph.css'
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import '../css/Chart.css'
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import Slider from './Slider';
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import NVD3Chart from 'react-nvd3';
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import d3 from 'd3';
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class GraphCytoscape extends React.Component {
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//this component is the right side
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class Visual extends React.Component {
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constructor(props) {
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super(props);
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this.animationLength = 101;
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@ -11,6 +15,7 @@ class GraphCytoscape extends React.Component {
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this.stepTime = 0;
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this.neverPlayed = true;
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this.state ={animationDuration: 4, step: 0, playing: false};
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console.log(require("./data.json"));
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}
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componentDidMount() {
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@ -110,7 +115,7 @@ class GraphCytoscape extends React.Component {
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//remove steps where the animation does not change
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cropAnimation = () => {
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console.log("hello");
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var data = this.props.simulationData;
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var data = this.props.simulationData.data;
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var lastState = data.length - 1;
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for (var i = data.length - 1; i > 0; i--) {
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//if (this.checkIfStatesAreEqual(data, lastState, i)) {
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@ -166,7 +171,7 @@ class GraphCytoscape extends React.Component {
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//this is the method to visualize the simulation
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visualizeOneStep = (increment = true) => {
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//the data of the simulation is stored in: this.props.simulationData
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var data = this.props.simulationData;
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var data = this.props.simulationData.data;
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if (data == null) {
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return;
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}
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@ -229,11 +234,29 @@ class GraphCytoscape extends React.Component {
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}
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}
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calculateChartData = () => {
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console.log(this.props.simulationData.stateCounts);
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for (let i = 0; i < this.props.simulationData.stateCounts.length; i++) {
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//set color
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this.props.simulationData.stateCounts[i].color =
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this.props.colors.find(element => element[0] ===
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this.props.simulationData.stateCounts[i]["key"]
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)[1]
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//apply cropping
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this.props.simulationData.stateCounts[i]["values"] =
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this.props.simulationData.stateCounts[i]["values"].slice(0, this.animationLength);
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}
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return this.props.simulationData.stateCounts;
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}
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render() {
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var playPauseString = "Play Simulation ▶️";
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if (this.state.playing) {
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playPauseString = "Stop Simulation ⏹️";
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}
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//show directed graph *or* chart
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//we want this to be a "tabbed" approach
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return (<div id="graphDiv">
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<button id="recalculate" onClick={this.recalculate}>Recalculate 🔁</button>
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<button id="runSimulationButton" onClick={this.visualizeSimulation}>{playPauseString}</button>
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@ -244,8 +267,11 @@ class GraphCytoscape extends React.Component {
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<Slider description="Step" min="0" max={this.animationLength} currentValue={this.state.step} handleChange={this.visualizeSpecificStep}/>
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<CytoscapeComponent id="cy" userZoomingEnabled={false} userPanningEnabled={false}
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cy={(cy) => { this.cy = cy }} elements={this.props.graphData}/>
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<div id="chart">
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<NVD3Chart type="stackedAreaChart" xAxis={{ tickFormat: (d) => d3.time.format('%x')(new Date(d)) }} datum={this.calculateChartData} x={(d) => d[0]} y={(d) => d[1]} />
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</div>
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</div>);
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}
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}
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export default GraphCytoscape;
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export default Visual;
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876
src/Simulation/data.json
Normal file
876
src/Simulation/data.json
Normal file
@ -0,0 +1,876 @@
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[{
|
||||
"key": "North America",
|
||||
"values": [
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[1025409600000, 23.041422681023],
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[1028088000000, 19.854291255832],
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[1041310800000, 19.828984957662],
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[1064894400000, 24.922476843538],
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[1072846800000, 26.658901244878],
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[1075525200000, 27.065704156445],
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[1083297600000, 30.932161503638],
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[1085976000000, 31.627029785554],
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[1088568000000, 28.728743674232],
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[1091246400000, 26.858365172675],
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[1093924800000, 27.279922830032],
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[1096516800000, 34.408301211324],
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[1109566800000, 31.19009040297],
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||||
[1036040400000, 1.5842699103708],
|
||||
[1038632400000, 1.9546996043116],
|
||||
[1041310800000, 0.8504048300986],
|
||||
[1043989200000, 0.85340686311353],
|
||||
[1046408400000, 0.843061357391],
|
||||
[1049086800000, 2.119846992476],
|
||||
[1051675200000, 2.5285382124858],
|
||||
[1054353600000, 2.5056570712835],
|
||||
[1056945600000, 2.5212789901005],
|
||||
[1059624000000, 2.6192011642534],
|
||||
[1062302400000, 2.5382187823805],
|
||||
[1064894400000, 2.3393223047168],
|
||||
[1067576400000, 2.491219888698],
|
||||
[1070168400000, 2.497555874906],
|
||||
[1072846800000, 1.734018115546],
|
||||
[1075525200000, 1.9307268299646],
|
||||
[1078030800000, 2.2261679836799],
|
||||
[1080709200000, 1.7608893704206],
|
||||
[1083297600000, 1.6242690616808],
|
||||
[1085976000000, 1.7161663801295],
|
||||
[1088568000000, 1.7183554537038],
|
||||
[1091246400000, 1.7179780759145],
|
||||
[1093924800000, 1.7314274801784],
|
||||
[1096516800000, 1.2596883356752],
|
||||
[1099195200000, 1.381177053009],
|
||||
[1101790800000, 1.4408819615814],
|
||||
[1104469200000, 3.4743581836444],
|
||||
[1107147600000, 3.3603749903192],
|
||||
[1109566800000, 3.5350883257893],
|
||||
[1112245200000, 3.0949644237828],
|
||||
[1114833600000, 3.0796455899995],
|
||||
[1117512000000, 3.3441247640644],
|
||||
[1120104000000, 4.0947643978168],
|
||||
[1122782400000, 4.4072631274052],
|
||||
[1125460800000, 4.4870979780825],
|
||||
[1128052800000, 4.8404549457934],
|
||||
[1130734800000, 4.8293016233697],
|
||||
[1133326800000, 5.2238093263952],
|
||||
[1136005200000, 3.382306337815],
|
||||
[1138683600000, 3.7056975170243],
|
||||
[1141102800000, 3.7561118692318],
|
||||
[1143781200000, 2.861913700854],
|
||||
[1146369600000, 2.9933744103381],
|
||||
[1149048000000, 2.7127537218463],
|
||||
[1151640000000, 3.1195497076283],
|
||||
[1154318400000, 3.4066964004508],
|
||||
[1156996800000, 3.3754571113569],
|
||||
[1159588800000, 2.2965579982924],
|
||||
[1162270800000, 2.4486818633018],
|
||||
[1164862800000, 2.4002308848517],
|
||||
[1167541200000, 1.9649579750349],
|
||||
[1170219600000, 1.9385263638056],
|
||||
[1172638800000, 1.9128975336387],
|
||||
[1175313600000, 2.3412869836298],
|
||||
[1177905600000, 2.4337870351445],
|
||||
[1180584000000, 2.62179703171],
|
||||
[1183176000000, 3.2642864957929],
|
||||
[1185854400000, 3.3200396223709],
|
||||
[1188532800000, 3.3934212707572],
|
||||
[1191124800000, 4.2822327088179],
|
||||
[1193803200000, 4.1474964228541],
|
||||
[1196398800000, 4.1477082879801],
|
||||
[1199077200000, 5.2947122916128],
|
||||
[1201755600000, 5.2919843508028],
|
||||
[1204261200000, 5.198978305031],
|
||||
[1206936000000, 3.5603057673513],
|
||||
[1209528000000, 3.3009087690692],
|
||||
[1212206400000, 3.1784852603792],
|
||||
[1214798400000, 4.5889503538868],
|
||||
[1217476800000, 4.401779617494],
|
||||
[1220155200000, 4.2208301828278],
|
||||
[1222747200000, 3.89396671475],
|
||||
[1225425600000, 3.0423832241354],
|
||||
[1228021200000, 3.135520611578],
|
||||
[1230699600000, 1.9631418164089],
|
||||
[1233378000000, 1.8963543874958],
|
||||
[1235797200000, 1.8266636017025],
|
||||
[1238472000000, 0.93136635895188],
|
||||
[1241064000000, 0.92737801918888],
|
||||
[1243742400000, 0.97591889805002],
|
||||
[1246334400000, 2.6841193805515],
|
||||
[1249012800000, 2.5664341140531],
|
||||
[1251691200000, 2.3887523699873],
|
||||
[1254283200000, 1.1737801663681],
|
||||
[1256961600000, 1.0953582317281],
|
||||
[1259557200000, 1.2495674976653],
|
||||
[1262235600000, 0.36607452464754],
|
||||
[1264914000000, 0.3548719047291],
|
||||
[1267333200000, 0.36769242398939],
|
||||
[1270008000000, 0],
|
||||
[1272600000000, 0],
|
||||
[1275278400000, 0],
|
||||
[1277870400000, 0],
|
||||
[1280548800000, 0],
|
||||
[1283227200000, 0],
|
||||
[1285819200000, 0.85450741275337],
|
||||
[1288497600000, 0.91360317921637],
|
||||
[1291093200000, 0.89647678692269],
|
||||
[1293771600000, 0.87800687192639],
|
||||
[1296450000000, 0],
|
||||
[1298869200000, 0],
|
||||
[1301544000000, 0.43668720882994],
|
||||
[1304136000000, 0.4756523602692],
|
||||
[1306814400000, 0.46947368328469],
|
||||
[1309406400000, 0.45138896152316],
|
||||
[1312084800000, 0.43828726648117],
|
||||
[1314763200000, 2.0820861395316],
|
||||
[1317355200000, 0.9364411075395],
|
||||
[1320033600000, 0.60583907839773],
|
||||
[1322629200000, 0.61096950747437],
|
||||
[1325307600000, 0],
|
||||
[1327986000000, 0],
|
||||
[1330491600000, 0],
|
||||
[1333166400000, 0],
|
||||
[1335758400000, 0]
|
||||
]
|
||||
}
|
||||
|
||||
]
|
||||
@ -97,15 +97,28 @@ function get_next_state(current_labels){
|
||||
|
||||
|
||||
function count_states(current_labels){
|
||||
let counter = [states.length];
|
||||
var counter = [];
|
||||
|
||||
for (var _ in states) {
|
||||
counter.push(0);
|
||||
}
|
||||
|
||||
|
||||
simulation.push(current_labels);
|
||||
|
||||
for(var label in current_labels){
|
||||
label = current_labels[label];
|
||||
let index = states[ label ];
|
||||
let index = states.indexOf(label);
|
||||
counter[index] += 1;
|
||||
}
|
||||
|
||||
let newX = state_counts[0]["values"].length;
|
||||
//add to the global counter value
|
||||
for (var i = 0; i < states.length; i++) {
|
||||
state_counts[i]["values"].push( [newX, counter[i]] );
|
||||
}
|
||||
}
|
||||
|
||||
function generateNodes(edgelist){
|
||||
let allNodes = [];
|
||||
for(var e in edgelist){
|
||||
@ -176,7 +189,7 @@ let timepoints_samples;
|
||||
let current_labels;
|
||||
let global_clock;
|
||||
let labels = [];
|
||||
let state_counts = [];
|
||||
let state_counts = {};
|
||||
|
||||
function simulate(newRules, newStates, newDistr, newGraph, newHorizon){
|
||||
simulation = [];
|
||||
@ -192,17 +205,24 @@ function simulate(newRules, newStates, newDistr, newGraph, newHorizon){
|
||||
global_clock = 0;
|
||||
labels = [];
|
||||
state_counts = [];
|
||||
|
||||
//initiate count_states
|
||||
for (var state in states) {
|
||||
state = states[state];
|
||||
state_counts.push({key: state, values: []});
|
||||
}
|
||||
|
||||
while(timepoints_samples.length > 0){
|
||||
let [new_labels, time_passed] = get_next_state(current_labels);
|
||||
global_clock += time_passed;
|
||||
while(timepoints_samples.length > 0 && global_clock > timepoints_samples[0]){
|
||||
labels.push(Array.from(current_labels));
|
||||
state_counts.push(count_states(current_labels));
|
||||
count_states(current_labels);
|
||||
timepoints_samples = timepoints_samples.slice(1, timepoints_samples.length);
|
||||
}
|
||||
current_labels = new_labels;
|
||||
}
|
||||
return simulation;
|
||||
return {data: simulation, stateCounts: state_counts};
|
||||
}
|
||||
|
||||
export default simulate;
|
||||
|
||||
7
src/css/Chart.css
Normal file
7
src/css/Chart.css
Normal file
@ -0,0 +1,7 @@
|
||||
#chart svg {
|
||||
height: 400px;
|
||||
width: 100%;
|
||||
}
|
||||
.nv-point-paths {
|
||||
display: none;
|
||||
}
|
||||
23
yarn.lock
23
yarn.lock
@ -3994,6 +3994,11 @@
|
||||
"es5-ext" "^0.10.50"
|
||||
"type" "^1.0.1"
|
||||
|
||||
"d3@^3.4.4", "d3@^3.5.16", "d3@^3.5.17":
|
||||
"integrity" "sha1-vEZ0gAQ3iyGjYMn8fPUjF5B2L7g="
|
||||
"resolved" "https://registry.npmjs.org/d3/-/d3-3.5.17.tgz"
|
||||
"version" "3.5.17"
|
||||
|
||||
"damerau-levenshtein@^1.0.6":
|
||||
"integrity" "sha512-JVrozIeElnj3QzfUIt8tB8YMluBJom4Vw9qTPpjGYQ9fYlB3D/rb6OordUxf3xeFB35LKWs0xqcO5U6ySvBtug=="
|
||||
"resolved" "https://registry.npmjs.org/damerau-levenshtein/-/damerau-levenshtein-1.0.6.tgz"
|
||||
@ -6615,6 +6620,7 @@
|
||||
"jest-snapshot" "^26.6.2"
|
||||
|
||||
"jest-resolve@*":
|
||||
"integrity" "sha512-tRAz2bwraHufNp+CCmAD8ciyCpXCs1NQxB5EJAmtCFy6BN81loFEGWKzYu26Y62lAJJe4X4jg36Kf+NsQyiStQ=="
|
||||
"version" "26.6.0"
|
||||
dependencies:
|
||||
"@jest/types" "^26.6.0"
|
||||
@ -7760,6 +7766,11 @@
|
||||
"resolved" "https://registry.npmjs.org/num2fraction/-/num2fraction-1.2.2.tgz"
|
||||
"version" "1.2.2"
|
||||
|
||||
"nvd3@^1.8.2":
|
||||
"integrity" "sha1-LT66dL8zNjtRAevx0JPFmlOuc8Q="
|
||||
"resolved" "https://registry.npmjs.org/nvd3/-/nvd3-1.8.6.tgz"
|
||||
"version" "1.8.6"
|
||||
|
||||
"nwsapi@^2.2.0":
|
||||
"integrity" "sha512-h2AatdwYH+JHiZpv7pt/gSX1XoRGb7L/qSIeuqA6GwYoF9w1vP1cw42TO0aI2pNyshRK5893hNSl+1//vHK7hQ=="
|
||||
"resolved" "https://registry.npmjs.org/nwsapi/-/nwsapi-2.2.0.tgz"
|
||||
@ -9280,7 +9291,7 @@
|
||||
"strip-ansi" "6.0.0"
|
||||
"text-table" "0.2.0"
|
||||
|
||||
"react-dom@*", "react-dom@^17.0.2", "react-dom@>=15.0.0":
|
||||
"react-dom@*", "react-dom@^17.0.2", "react-dom@>=0.14.0", "react-dom@>=15.0.0":
|
||||
"integrity" "sha512-s4h96KtLDUQlsENhMn1ar8t2bEa+q/YAtj8pPPdIjPDGBDIVNsrD9aXNWqspUe6AzKCIG0C1HZZLqLV7qpOBGA=="
|
||||
"resolved" "https://registry.npmjs.org/react-dom/-/react-dom-17.0.2.tgz"
|
||||
"version" "17.0.2"
|
||||
@ -9304,6 +9315,14 @@
|
||||
"resolved" "https://registry.npmjs.org/react-is/-/react-is-17.0.1.tgz"
|
||||
"version" "17.0.1"
|
||||
|
||||
"react-nvd3@^0.5.7":
|
||||
"integrity" "sha1-Bul8pada/L9qx/VHUhf0HBsHYqc="
|
||||
"resolved" "https://registry.npmjs.org/react-nvd3/-/react-nvd3-0.5.7.tgz"
|
||||
"version" "0.5.7"
|
||||
dependencies:
|
||||
"d3" "^3.5.16"
|
||||
"nvd3" "^1.8.2"
|
||||
|
||||
"react-refresh@^0.8.3", "react-refresh@>=0.8.3 <0.10.0":
|
||||
"integrity" "sha512-X8jZHc7nCMjaCqoU+V2I0cOhNW+QMBwSUkeXnTi8IPe6zaRWfn60ZzvFDZqWPfmSJfjub7dDW1SP0jaHWLu/hg=="
|
||||
"resolved" "https://registry.npmjs.org/react-refresh/-/react-refresh-0.8.3.tgz"
|
||||
@ -9375,7 +9394,7 @@
|
||||
optionalDependencies:
|
||||
"fsevents" "^2.1.3"
|
||||
|
||||
"react@*", "react@^17.0.2", "react@>= 16", "react@>=15.0.0", "react@17.0.2":
|
||||
"react@*", "react@^17.0.2", "react@>= 16", "react@>=0.14.0", "react@>=15.0.0", "react@17.0.2":
|
||||
"integrity" "sha512-gnhPt75i/dq/z3/6q/0asP78D0u592D5L1pd7M8P+dck6Fu/jJeL6iVVK23fptSUZj8Vjf++7wXA8UNclGQcbA=="
|
||||
"resolved" "https://registry.npmjs.org/react/-/react-17.0.2.tgz"
|
||||
"version" "17.0.2"
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user