diff --git a/:w b/:w deleted file mode 100644 index 6b8a474..0000000 --- a/:w +++ /dev/null @@ -1,6 +0,0 @@ -#mynetwork { - height: 500px; - width: 500px; - background-color: white; - border: 4px black; -} diff --git a/ä b/ä deleted file mode 100644 index ad7b49f..0000000 --- a/ä +++ /dev/null @@ -1,68 +0,0 @@ -import math, random, os, time, sys, io -import json -import numpy as np -import networkx as nx -import scipy -import time -from networkx.drawing.nx_pydot import write_dot - -def clean_shuffle_graph(G): - random_seed_state = int(random.random()*100000) # quick hack to go back to random afterwards - random.seed(42) - node_mapping = dict(zip(sorted(G.nodes()), sorted(G.nodes(), key=lambda _: random.random()))) # maybe sorted not really deterministic - G = nx.relabel_nodes(G, node_mapping) - G = nx.convert_node_labels_to_integers(G) - if not nx.is_connected(G): - print('Graph is not connected, try a differnt one.') - assert(nx.is_connected(G)) - random.seed(random_seed_state) - return G - -def gen_sis(G, steps = 1000, inf_rate=1.0, rec_rate=2.0, noise=0.1, statesList = None): - S = [1., 0.] - I = [0., 1.] - states = [random.choice([S, I]) for i in range(G.number_of_nodes())] - for _ in range(steps): - rates = np.zeros(G.number_of_nodes()) - for n in range(G.number_of_nodes()): - rates[n] = noise - if states[n] == I: - rates[n] += rec_rate - if states[n] == S: - rates[n] += inf_rate * len([n_j for n_j in G.neighbors(n) if states[n_j] == I]) - rates[n] = 1.0/rates[n] # numpy uses mean as rate param - jump_time = np.random.exponential(rates) - change_n = np.argmin(jump_time) - states[change_n] = S if states[change_n] == I else I - statesList.append(states.copy()) - return states - -statesList = [] -steps = 1000 + random.choice(range(1000)) -G_grid10x10 = nx.grid_2d_graph(10,10) -G = clean_shuffle_graph(G_grid10x10) -TS_data = gen_sis(G, steps=steps,statesList=statesList) -# print(G.number_of_nodes()) -# f = open("graph.dot", "rw") -# nx.drawing.nx_pydot.write_dot(G,f) -# f.write("\n") -# f.close() -# Writing the json file to stdout -# f = StringIO("") -dotGraph = "" - -#Write dot file to string -with io.StringIO() as f: - write_dot(G, f) - f.seek(0) - dotGraph = f.read() - -output = { - "name" : "testGraph", - "dotGraph" : dotGraph, - "steps" : steps, - "states" : statesList, - } - -jsonOutput = json.dumps(output) -print(jsonOutput)